[maker-devel] error message from GenemarkES

[Carson Holt]

This might be a better thing to ask one of the GeneMark developers ( borodovsky at gatech.edu ) since so far you are just running GeneMark by itself.  At first glance, it could be that make_mat.v3.0.ini.csh is just not set as executable.

Try typing this into a terminal and then running again:
 chmod +x /home/gegene/bin/GeneMark-ES/make_mat.v3.0.ini.csh

Also run /home/gegene/bin/GeneMark-ES/make_mat.v3.0.ini.csh by itself to see if any errors appear.  When I try running this script without any arguments it just exits without any failures, so at least I know it is working on my machine.  Try the same on your own machine.

Thanks,
Carson


On 3/23/10 11:08 AM, "Eugénie Pessia" <eugenie.pessia at ens-lyon.fr> wrote:

Dear colleagues,

I am trying to launch GenemarkES on my species to be able to use it in
Maker.
However, I got this error message:

running hmm2nt.a2
91 files IN
Can't exec "/home/gegene/bin/GeneMark-ES/make_mat.v3.0.ini.csh": No such
file or directory at ../../gm_es.pl line 257.
Died at ../../gm_es.pl line 257.

Which is strange, because the file make_mat.v3.0.ini.csh exists in my
/home/gegene/bin/GeneMark-ES/ directory ...

Do you have any idea of what I can do (I am using Linux 32 bits)?

Thanks in advance,
Eugénie Pessia

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