[maker-devel] Problem with features going against wrong organism

[Shane Brubaker]

Hi, I sent an email earlier about this but didn't really hear back.

I dug into the problem more (basically my transcriptome and other tracks were not showing up on my test organism).  After looking at the error_log and doing some debugging, I confirmed that new tracks I load onto a test organism have a srcfeature_id which points to the same scaffold, but on my production organism.

I am definitely typing in the name of the test organism when I do the load (I am using chado, gmod_gff3_bulk_load).

I confirmed that if I change the srcfeature_id in the database, I can now see the track.

So I am wondering if anyone has seen this before?   And what do you recommend I do next?  I could:


1)      Rebuild my entire system

2)      Try to debug what is happening (maybe in the load script?)

3)      Just write a script that fixes the problem by updating the src_featureids

Thanks,
Shane

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