[maker-devel] Maker with GeneMarkS

Mihaela Angelova mihaela.angelova at tugraz.at
Wed Jan 13 07:17:01 MST 2010


Hello,
I would like to use Maker for gene annotation of a prokaryote. As I  
read from the manual, with the option -predictor=genemark, I tell  
Maker to use GeneMarkS. However, the program fails because there is no  
model file, which should not be a problem, because GeneMarks does ab  
initio prediction.
If i use a model file, the program still fails with the following  
error message:
"Undefined subroutine &evaluator::evaluate::evaluate_maker_annotations called
ERROR: Failed while calculating annotations!!"
Could you, please, inform me how to use Maker with GeneMarkS.
Thank you!
Best regards,
Mihaela







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