[maker-devel] Can't load DBI?

[Matthew Conte]

Hi Carson,

*/usr/bin/perl -v *
*This is perl, v5.8.5 built for x86_64-linux-thread-multi*
*
*
*perl -v*
*This is perl, v5.8.7 built for x86_64-linux*
*
*
*which perl*
*/usr/local/bin/perl*
*
*
It took me a bit, but I got DBI and DBD::SQLite installed using that perl
5.8.5 multi thread installation.  Maker seems to be running fine now.  I
even got the MPI version running.

Thanks for sending me in the right direction.

-Matt

On Tue, Feb 9, 2010 at 3:13 PM, Carson Holt
<carson.holt at genetics.utah.edu>wrote:

>  First type /usr/bin/perl –v rather than perl –v and see what you get.
>  There may be more than one version of perl installed.  Let me know. What
> you find.
>
> If that is not the case, you can also delete the /maker/perl/lib/ directory
> and install DBI and DBD::SQLite manually via cpan and see if that makes a
> difference.
>
> Thanks,
> Carson
>
>
>
> On 2/9/10 1:08 PM, "Matthew Conte" <mconte at umd.edu> wrote:
>
> Good afternoon,
>
> I'm trying to get Maker running on a cluster of ours and I'm seeing the
> following error when I run maker after following all the install steps:
>
> *
> #----------------------
> FATAL: failed!!
> #----------------------
> #----------------------
> FATAL: failed!!
> #----------------------
> #----------------------
> FATAL: failed!!
> #----------------------
> #----------------------
> FATAL: failed!!
> #----------------------
> #----------------------
> FATAL: failed!!
> #----------------------
> #----------------------
> FATAL: failed!!
> #----------------------
> #----------------------
> FATAL: failed!!
> #----------------------
> #----------------------
> FATAL: failed!!
> #----------------------
> #----------------------
> FATAL: failed!!
> #----------------------
> #----------------------
> FATAL: failed!!
> #----------------------
> Can't load
> '/a/f20-fs1/export/home/deepthought/mconte/maker/bin/../perl/lib/auto/DBI/DBI.so'
> for module DBI:
> /a/f20-fs1/export/home/deepthought/mconte/maker/bin/../perl/lib/auto/DBI/DBI.so:
> undefined symbol: PL_sv_undef at
> /usr/lib64/perl5/5.8.5/x86_64-linux-thread-multi/DynaLoader.pm line 230.
>  at /a/f20-fs1/export/home/deepthought/mconte/maker/bin/../perl/lib/DBI.pm
> line 263
>
> BEGIN failed--compilation aborted at
> /a/f20-fs1/export/home/deepthought/mconte/maker/bin/../perl/lib/DBI.pm line
> 263.
>
> Compilation failed in require at
> /a/f20-fs1/export/home/deepthought/mconte/maker/bin/../lib/GFFDB.pm line 8.
>
> BEGIN failed--compilation aborted at
> /a/f20-fs1/export/home/deepthought/mconte/maker/bin/../lib/GFFDB.pm line 8.
>
> Compilation failed in require at
> /a/f20-fs1/export/home/deepthought/mconte/maker/bin/../lib/maker/
> auto_annotator.pm <http://auto_annotator.pm>  line 21.
>
> BEGIN failed--compilation aborted at
> /a/f20-fs1/export/home/deepthought/mconte/maker/bin/../lib/maker/
> auto_annotator.pm <http://auto_annotator.pm>  line 21.
>
>
> Compilation failed in require at
> /a/f20-fs1/export/home/deepthought/mconte/maker/bin/../lib/GI.pm line 39.
>
> BEGIN failed--compilation aborted at
> /a/f20-fs1/export/home/deepthought/mconte/maker/bin/../lib/GI.pm line 39.
>
> Compilation failed in require at /homes/mconte/maker/bin/maker line 61.
>
> BEGIN failed--compilation aborted at /homes/mconte/maker/bin/maker line 61.
> *
>
>
> DBI and maker seem to have installed correctly during the perl Install.PL
> step.  I was wondering if anyone had encountered this issue before while I
> continue to figure out the problem.  The only thing that seems a little odd
> to me at this point is that I'm using perl 5.8.7 and it is mentioning */usr/lib64/perl5/5.8.5/x86_64-linux-thread-multi/DynaLoader.pm
> . *That DynaLoad.pm is identical to the one in the perl 5.8.7 install
> though.
>
> Thanks,
> Matt Conte
>
>
>
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