[maker-devel] Can't load DBI?

Matthew Conte mconte at umd.edu
Tue Feb 9 13:08:13 MST 2010


Good afternoon,

I'm trying to get Maker running on a cluster of ours and I'm seeing the
following error when I run maker after following all the install steps:

*#----------------------*
*FATAL: failed!!*
*#----------------------*
*#----------------------*
*FATAL: failed!!*
*#----------------------*
*#----------------------*
*FATAL: failed!!*
*#----------------------*
*#----------------------*
*FATAL: failed!!*
*#----------------------*
*#----------------------*
*FATAL: failed!!*
*#----------------------*
*#----------------------*
*FATAL: failed!!*
*#----------------------*
*#----------------------*
*FATAL: failed!!*
*#----------------------*
*#----------------------*
*FATAL: failed!!*
*#----------------------*
*#----------------------*
*FATAL: failed!!*
*#----------------------*
*#----------------------*
*FATAL: failed!!*
*#----------------------*
*Can't load
'/a/f20-fs1/export/home/deepthought/mconte/maker/bin/../perl/lib/auto/DBI/DBI.so'
for module DBI:
/a/f20-fs1/export/home/deepthought/mconte/maker/bin/../perl/lib/auto/DBI/DBI.so:
undefined symbol: PL_sv_undef at
/usr/lib64/perl5/5.8.5/x86_64-linux-thread-multi/DynaLoader.pm line 230.*
* at /a/f20-fs1/export/home/deepthought/mconte/maker/bin/../perl/lib/DBI.pm
line 263*
*
*
*BEGIN failed--compilation aborted at
/a/f20-fs1/export/home/deepthought/mconte/maker/bin/../perl/lib/DBI.pm line
263.*
*
*
*Compilation failed in require at
/a/f20-fs1/export/home/deepthought/mconte/maker/bin/../lib/GFFDB.pm line 8.*
*
*
*BEGIN failed--compilation aborted at
/a/f20-fs1/export/home/deepthought/mconte/maker/bin/../lib/GFFDB.pm line 8.*
*
*
*Compilation failed in require at
/a/f20-fs1/export/home/deepthought/mconte/maker/bin/../lib/maker/
auto_annotator.pm line 21.*
*
*
*BEGIN failed--compilation aborted at
/a/f20-fs1/export/home/deepthought/mconte/maker/bin/../lib/maker/
auto_annotator.pm line 21.*
*
*
*Compilation failed in require at
/a/f20-fs1/export/home/deepthought/mconte/maker/bin/../lib/GI.pm line 39.*
*
*
*BEGIN failed--compilation aborted at
/a/f20-fs1/export/home/deepthought/mconte/maker/bin/../lib/GI.pm line 39.*
*
*
*Compilation failed in require at /homes/mconte/maker/bin/maker line 61.*
*
*
*BEGIN failed--compilation aborted at /homes/mconte/maker/bin/maker line 61.
*


DBI and maker seem to have installed correctly during the perl Install.PL
step.  I was wondering if anyone had encountered this issue before while I
continue to figure out the problem.  The only thing that seems a little odd
to me at this point is that I'm using perl 5.8.7 and it is mentioning
*/usr/lib64/perl5/5.8.5/x86_64-linux-thread-multi/DynaLoader.pm
. *That DynaLoad.pm is identical to the one in the perl 5.8.7 install
though.

Thanks,
Matt Conte
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