[maker-devel] MAKER Install

[Barry Moore]

Daniel,

Did you remember to set the ZOE environment variable for snap?   
Something like this:

export ZOE=where_snap_is_installed # for bash

or this:

setenv ZOE where_snap_is_installed # for tcsh


On Sep 22, 2009, at 5:21 PM, Daniel Standage wrote:

> Hi all,
>
> I am trying to get Maker working on our system.  I finally have all  
> of the prerequisites installed, and they all appear to be working  
> fine.  I'm now using the example data to test maker and it is not  
> working.  I created a directory for the test, copied over the test  
> data, generated the control files, and made the following changes to  
> the control files.
> In maker_bopts.ctl
> blast_type:ncbi
> In maker_opts.ctl
> genome:dpp_contig.fasta
> est:dpp_transcripts.fasta
> protein:dpp_proteins.fasta
> snaphmm:fly
> predictor:snap
> Then when I run maker (using the command maker maker_exe.ctl  
> maker_opts.ctl maker_bopts.ctl), it gives the following error message.
>
> #----------------------
> FATAL: failed!!
> #----------------------
> ERROR: The snaphmm specified for Snap/Fathom in maker_opts.ctl does  
> not exist.
>
> I verified that there is a "fly" file in SNAP's HMM directory, so I  
> don't know what could be causing this.  Does anyone have any insight?
>
> Thanks,
>
> Daniel Standage
> Plant Genetics Lab
> Brigham Young University
> <ATT00001.txt>

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