[maker-devel] MAKER Install

[Daniel Standage]

Hi all,

I am trying to get Maker working on our system.  I finally have all of the
prerequisites installed, and they all appear to be working fine.  I'm now
using the example data to test maker and it is not working.  I created a
directory for the test, copied over the test data, generated the control
files, and made the following changes to the control files.

   - In maker_bopts.ctl
      - blast_type:ncbi
   - In maker_opts.ctl
      - genome:dpp_contig.fasta
      - est:dpp_transcripts.fasta
      - protein:dpp_proteins.fasta
      - snaphmm:fly
      - predictor:snap

Then when I run maker (using the command maker maker_exe.ctl maker_opts.ctl
maker_bopts.ctl), it gives the following error message.

#----------------------
FATAL: failed!!
#----------------------
ERROR: The snaphmm specified for Snap/Fathom in maker_opts.ctl does not
exist.

I verified that there is a "fly" file in SNAP's HMM directory, so I don't
know what could be causing this.  Does anyone have any insight?

Thanks,

Daniel Standage
Plant Genetics Lab
Brigham Young University
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