[maker-devel] representing gene tracks in gbrowse

[Shane Brubaker]

Hi, can someone recommend for me the proper way to configure a gbrowse track for the display of maker genes?

I am running maker and producing gene models from augustus and snap.  I then load the data into chado.  This produces a feature for an mRNA with a polypeptide, and exons.

No matter what I do to change the track configuration, I see a solid block instead of seeing the exons represented explicitly as in a typical gene model.  However my "protein_matches" track does appear
segemented when I change the glyph to segments.

In fact it is a bit strange, when I change the color or height I don't really see any change ... but if I change the key for example I will see the change when I refresh.

Can anyone tell me the proper way to configure the track?

Here is my current configuration:

[Genes]
feature = gene
glyph = transcript
base = 1
ignore_sub_part = CDS intron
fgcolor = blue
height = 15
linewidth = 2
key = Named gene



Thanks for your help.

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