[maker-devel] Question on ESTs and functional annotations

[Shane Brubaker]

Hi, I had a couple of general questions.

1.  What are the EST blastn results that are found in the MAKER gff3 output?  I thought these might be a track of my ESTs mapped onto the genome, but they seem to contain pieces of the EST but not the entire thing?
2.  What is a good way to add functional annotation to the gene results? I have a track of protein matches, I used Swissprot as my set of proteins.  So I can see proteins and I can look up my Swissprot accession number and find out more about that gene.  But what I really want is to click on my actual gene models (from augustus or snap) and then have some functional annotation on that page which has been transferred onto the gene, as well as some links out to the appropriate external sites.  Is there a good general approach for doing that?


Thanks,
Shane

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