[maker-devel] <MAKER Trac Server> #28: readline() on closed filehandle GEN162 at ../est2genome.pm line 44

[MAKER]

#28: readline() on closed filehandle GEN162 at ../est2genome.pm line 44
-------------------------------+--------------------------------------------
 Reporter:  sspao at ucdavis.edu  |       Owner:       
     Type:  defect             |      Status:  new  
 Priority:  major              |   Milestone:       
Component:  Code               |     Version:  0.001
 Keywords:                     |  
-------------------------------+--------------------------------------------
 Run stops with multiple readline() on closed filehandle messages and
 finally with:
 ------------- EXCEPTION  -------------
 MSG: Could not open
 /home/sspao/runvv4/theVoid.vvgrm.seq/vvgrm.seq.1.dicotvtvvEST.blastn: No
 such file or directory
 STACK Bio::Root::IO::_initialize_io /home/sspao/mod/Bio/Root/IO.pm:273
 STACK Bio::Root::IO::new /home/sspao/mod/Bio/Root/IO.pm:213
 STACK Bio::SearchIO::new /home/sspao/mod/Bio/SearchIO.pm:135
 STACK Bio::SearchIO::new /home/sspao/mod/Bio/SearchIO.pm:167
 STACK Widget::blastn::parse
 /home/sspao/apps/maker/bin/../lib/Widget/blastn.pm:53
 STACK main::blastn /home/sspao/apps/maker/bin/maker:1290
 STACK toplevel /home/sspao/apps/maker/bin/maker:336

 --------------------------------------

 Other relevant information:
 the second file (/vvgrm.seq.1.dicotvtvvEST.blastn) is not found in theVoid
 directory.
 this error is repeatable presently, however a previous run did not appear
 to have this problem.

-- 
Ticket URL: <http://malachite.genetics.utah.edu/projects/maker/ticket/28>
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