[maker-devel] GeneMark HMM

[Xavier Watkins]

Hi there,

I've recently started using Maker and it's great!
I've got RepeatMasker, Snap and Blastall working fine but I'm having  
problems with GeneMark HMM. I think the problem comes from the fact it  
doesn't seem to like output file paths longer than about 90  
characters...
When I run it from the command line I get "ehmm: error in command  
line" but when I reduce the length of the -o path it runs fine. As the  
path generated by maker is quite long, I was wondering if you had come  
across this problem and found a workaround? I'm running GeneMark.hmm  
eukaryotic on LINUX 64.

Many thanks,
Xavier

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