[maker-devel] <MAKER Trac Server> #3: dead in Widget::augustus::parse_gene unknown feature type:exon

[MAKER]

#3: dead in Widget::augustus::parse_gene unknown feature type:exon
-----------------------+----------------------------------------------------
 Reporter:  anonymous  |       Owner:       
     Type:  defect     |      Status:  new  
 Priority:  major      |   Milestone:       
Component:  Code       |     Version:  0.001
 Keywords:             |  
-----------------------+----------------------------------------------------
 Maker crashes when parsing augustus results

 Error message:
 ''dead in Widget::augustus::parse_gene unknown feature type:exon''

 The hints file is being read, but when field[2] is read it doesn't support
 the hint types mentioned in Augustus 2.0: exon, tts, tss (these might
 occur but haven't occurred in my data:: CDSpart, UTR, UTRpart, irpart,
 nonexonpart)

 Attempts to solve:
 1. Added elseif statements to bypass unknown hints. This is problematic
 since without the exon hints I'm unsure if the Augustus results are
 correct or not. I attempted to compare a maker run with Augustus bypassing
 the hints and a maker run without Augustus.

-- 
Ticket URL: <http://malachite.genetics.utah.edu/projects/maker/ticket/3>
MAKER <http://www.yandell-lab.org/maker>
MAKER annotation pipline